Send a sequence without tracking
You can send toggle the same download and click-tracking settings on a per Sequence basis as well. Navigate to the "Settings" tab in any sequence.
Go to the Confirm or Settings page of your sequence, and check the boxes next to Track opens and Track clicks and Track downloads as desired.
Note that if you choose not to track opens, you cannot send followup stages with the trigger "If not read". You can still send a sequence with followup stages "if not replied" and "regardless".